Python Markdown Notebook in Atom

Jake Jing
5 min readJul 19, 2020

I am trying to deploy the environments for python markdown notebook in Atom, so that you can compile your python script (*.pmd) into a pdf file. This configuration is tailored for markdown lovers and R users, who are looking for a python IDE similar to Rstudio. It is also useful for researchers who want to attach their scripts as well-formed pdfs in the publications. I include the template files, scripts and other settings in my github repository.

  1. install Pweave via pip
>> pip3 install --upgrade Pweave

2. download and install Atom

3. install the necessary packages via Atom package manager

>> apm install Hydrogen document-outline linter-ui-default atom-file-icons expand-region markdown-cell-highlight atom-html-preview expand-selection-to-quotes minimap atom-material-syntax find-selection platformio-ide-terminal atom-shell-commands hydrogen-cell-separator python-autopep8 autocomplete hydrogen-launcher python-debugger autocomplete-python hydrogen-python python-indent autocomplete-python-jedi intentions restart-atom brunel-syntax jvpr-dark-syntax simple-center-screen busy-signal kite cell-navigation language-weave default-language linter document-outline

4. configurations for Atom

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Jake Jing
Jake Jing

Written by Jake Jing

Programming, Data science & Deep learning!

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